The optional colormap can be used to color the spheres. If it is omitted, the values used are as follows:
ATOM NUMBER COLOR Hydrogen 1 pale white Carbon 6 pale green Nitrogen 7 blue Oxygen 8 red Fluorine 9 green Phosphorus 15 violet Sulfur 16 yellow Chlorine 17 green Bromine 35 gray
Port: Molecule
Type: Pyramid
Constraints: n-layer.
optional-baseLat.
n-D compression.
n-compression type.
The source molecule.
Port: Colormap
Type: Lattice
Optional: This port is optional
Constraints: 1-D.
4-vector.
A colormap to use to color the atoms.
The value from the colormap is the "color" data variable from
the chemistry pyramid.
The ReadPDB module fills this value with the atomic number of the atom.
Port: Radius
Type: Dial
Ball radius normalized to Van der Waals radius.
Port: Complexity
Type: Slider
Complexity (or resolution) of spheres and cylinders. 0 is lowest
complexity, which results in a crude representation of the geometry
that renders quickly; increasing the complexity gives a higher quality
representation.
Port: Output
Type: Geometry
Sphere and Cylinder geometry.